A B C D E F G H I J L M N O P Q R S T U V W X

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SanitizeMODSXML - Class in org.vivoweb.harvester.translate

SanitizeMODSXML(RecordHandler, RecordHandler, boolean) - Constructor for class org.vivoweb.harvester.translate.SanitizeMODSXML

Constructor

SanitizeMODSXML(String[]) - Constructor for class org.vivoweb.harvester.translate.SanitizeMODSXML

Constructor

SanitizeMODSXML(ArgList) - Constructor for class org.vivoweb.harvester.translate.SanitizeMODSXML

Constructor

Score - Class in org.vivoweb.harvester.score

VIVO Score

Score(JenaConnect, JenaConnect, JenaConnect, String, Map<String, Class<? extends Algorithm>>, Map<String, String>, Map<String, String>, String, Map<String, Float>, int) - Constructor for class org.vivoweb.harvester.score.Score

Constructor

Score(String...) - Constructor for class org.vivoweb.harvester.score.Score

Constructor

Score(ArgList) - Constructor for class org.vivoweb.harvester.score.Score

Constructor Scoring.close();

SDBJenaConnect - Class in org.vivoweb.harvester.util.repo

Connection Helper for SDB Jena Models

SDBJenaConnect(String, String, String, String, String, String) - Constructor for class org.vivoweb.harvester.util.repo.SDBJenaConnect

Constructor (Default Model)

SDBJenaConnect(String, String, String, String, String, String, String) - Constructor for class org.vivoweb.harvester.util.repo.SDBJenaConnect

Constructor (SDB Named Model)

setBatchSize(String) - Method in class org.vivoweb.harvester.fetch.NIHFetch

setBatchSize(int) - Method in class org.vivoweb.harvester.score.Match

Set the processing batch size

setBatchSize(int) - Method in class org.vivoweb.harvester.score.Score

Set the processing batch size

setData(String, Class<?>) - Method in class org.vivoweb.harvester.util.repo.Record

Setter for Data

setDefaultValue(String) - Method in class org.vivoweb.harvester.util.args.ArgDef

Sets the default value

setDescription(String) - Method in class org.vivoweb.harvester.util.args.ArgDef

Sets the description of this argument

setEmailAddress(String) - Method in class org.vivoweb.harvester.fetch.NIHFetch

setFieldPrefix(String) - Method in class org.vivoweb.harvester.fetch.JDBCFetch

Set the field prefix

setFieldSuffix(String) - Method in class org.vivoweb.harvester.fetch.JDBCFetch

Set the field suffix

setIncomingSchema(File) - Method in class org.vivoweb.harvester.translate.GlozeTranslator

Setter for schema

setIncomingXMLFile(File) - Method in class org.vivoweb.harvester.translate.GlozeTranslator

Setter for xmlFile

setJenaModel(Model) - Method in class org.vivoweb.harvester.util.repo.JenaConnect

Setter

setLongOpt(String) - Method in class org.vivoweb.harvester.util.args.ArgDef

Sets the long --Foo type option flag

setMaxRecords(String) - Method in class org.vivoweb.harvester.fetch.NIHFetch

setModelName(String) - Method in class org.vivoweb.harvester.util.repo.JenaConnect

Set the modelName

setOsWriter(OutputStream) - Method in class org.vivoweb.harvester.fetch.NIHFetch

Setter for xmlwriter

setOverwriteDefault(boolean) - Method in class org.vivoweb.harvester.util.repo.RecordHandler

Setter for overwriteDefault

setParams(Map<String, String>) - Method in class org.vivoweb.harvester.util.repo.JDBCRecordHandler

setParams(Map<String, String>) - Method in class org.vivoweb.harvester.util.repo.JenaRecordHandler

setParams(Map<String, String>) - Method in class org.vivoweb.harvester.util.repo.MapRecordHandler

setParams(Map<String, String>) - Method in class org.vivoweb.harvester.util.repo.RecordHandler

Sets parameters from param list

setParams(Map<String, String>) - Method in class org.vivoweb.harvester.util.repo.TextFileRecordHandler

setProcessed(Class<?>) - Method in class org.vivoweb.harvester.util.repo.Record

Set this record as processed by the given operator

setProcessed(Record, Class<?>) - Method in class org.vivoweb.harvester.util.repo.RecordHandler

Add a metadata record to indicate that the given operator has processed the given record

setRecordHandler(RecordHandler) - Method in class org.vivoweb.harvester.util.repo.XMLRecordOutputStream

Set the record handler

setRequired(boolean) - Method in class org.vivoweb.harvester.util.args.ArgDef

Sets this argument as required

setSearchTerm(String) - Method in class org.vivoweb.harvester.fetch.NIHFetch

setShortOption(char) - Method in class org.vivoweb.harvester.util.args.ArgDef

Sets the short -X type option flag

setTranslation(InputStream) - Method in class org.vivoweb.harvester.translate.XSLTranslator

Set translation file from an inputSteam

setTranslation(File) - Method in class org.vivoweb.harvester.translate.XSLTranslator

Set translation file from a file

setURIBase(String) - Method in class org.vivoweb.harvester.translate.GlozeTranslator

Setter for uriBase

setWritten(Record, Class<?>) - Method in class org.vivoweb.harvester.util.repo.RecordHandler

Add a metadata record to indicate that the given operator has written the given record

size() - Method in class org.vivoweb.harvester.util.repo.JenaConnect

Get the size of a jena model

sparqlFile - Variable in class org.vivoweb.harvester.translate.SPARQLTranslator

SPARQLTranslator - Class in org.vivoweb.harvester.translate

Takes XML Files and uses an XSL file to translate the data into the desired ontology

SPARQLTranslator(String[]) - Constructor for class org.vivoweb.harvester.translate.SPARQLTranslator

Constructor

SPARQLTranslator(ArgList) - Constructor for class org.vivoweb.harvester.translate.SPARQLTranslator

Constructor

SpecialEntities - Class in org.vivoweb.harvester.util

SpecialEntities() - Constructor for class org.vivoweb.harvester.util.SpecialEntities